Probably the oldest bug we've ever fixed has caused a lot of planets to shift stats and control. Check your planets to see what may have changed. Some adjustments may be needed for optimizations.
Note: The Darkness Worlds losing control will be addressed please don't build there. If you do, I will destroy it and will be hard pressed to refund you.
Mikel edit: The bug affected a few building types behind the scenes not adjusting Crime and Morale properly. Additionally, many Excel wizards have figured out before now that the Crime Each2 list actually contains everything in the Each1 list, even though the Rules do not make that clear. We are working on adding them to the rules list so which facilities are contained in which lists will be more obvious.