The final stage of the Sith's plan was now in motion. Drayson, sporting several lightsaber cuts on his cheek and arms as well as some deformation on his right arm from force lightning, addressed the Senate, informing them of the Jedi betrayal. Throughout the galaxy, the Republic military began to murder their Jedi generals, though many were able to elude the clone troops. Drayson announced the formation of the first Galactic Empire to thunderous applause from the senators. Meanwhile such senators as Zee Wolf, Mon Akira and Syrous looked on with concern before aiding the escape of Masters Relm and Bodo Baas from Coruscant. As their goal had been achieved, Vodo Bonias met with the Confederacy's leadership on Vinsoth. Once the Confederate military had deactivated, the Sith Lord wiped out its leadership, effectively ending the conflict.
Edited By: Ben Camden on Year 15 Day 4 1:58 ____________
Just an aside, but in canon Order 66 wasn't secret. It was a published and relatively well known operating procedure. Order 65 involved the removal of the Supreme Chancellor should there be a majority vote of the Senate ordering it or the Security Council declaring him unfit to serve.
The mere fact that they attempted to cover every contingency in the Contingency Orders (there were 150 of them) probably made few even bat an eyelash about the Jedi bit.